PyDora¶

PyDora is a toolkit to retrieve samples and metadata from the MPI-EVA Pandora internal database. PyDora is the Python cousin of Sidora.

You can use PyDora both as a command line tool, or directly from Python.

Installation¶

Install using pip (most people)

If you don’t have set up your GitHub ssh keys

$ pip install git+https://github.com/sidora-tools/pydora

If you have set up your GitHub ssh keys

$ pip install git+ssh://git@github.com/sidora-tools/pydora.git

Install in dev environment

$ git clone git@github.com/sidora-tools/pydora.git
$ cd pydora
$ conda create -f environment.yml
$ conda activate pydora_dev
$ pip install -e .

Quick start¶

$ pydora -c credentials.json -t assets/example_tags.txt
Successfully Connected to Pandora Database
Making request to Pandora SQL server
Downloaded table
Samples and metadata have been written to /Users/maxime/Documents/github/pydora/pandora_samples.csv

Documentation¶

The documentation of PyDora is available here: pydora.rtfd.io